[CompNeuro] Python Package: Echo State Networks

[Fabrizio Damicelli]

Dear Computational Neuroscience Community,

I would like to point you to a potentially useful Python Package that might
be of interest for your research, especially in the realms of
"Biologically-inspired Neural Networks", "Shallow Learning" and "Recurrent
Neural Networks" in general.

"echoes": Machine Learning with Echo State Networks, a scikit-learn
compatible package.
Code Repository: https://github.com/fabridamicelli/echoes

A few interesting features:
 - scikit-learn compatible, i.e. scikit-learn tools such as GridSearchCV
should work out-of-the-box
 - It is light-weight and fast (`numba` accelerated), i.e. many experiments
can be simply run on a laptop
 - Flexible and customizable, e.g. use arbitrary connectivity, add custom
activations, visualize neurons activity, etc.
 - Installation and getting started is easy: `pip install echoes`
 - Example notebooks:
https://github.com/fabridamicelli/echoes/tree/master/examples/notebooks
 - Documentation: https://fabridamicelli.github.io/echoes/

As of today, a few people already trust it and the package registers >18K
total downloads, ~500/month (pypi.org) and has been used already in a few
research projects:
 - Hadaeghi et. al. (2021) Spatio-temporal feature learning with reservoir
computing for T-cell segmentation in live-cell Ca2+ fluorescence
microscopy: www.nature.com/articles/s41598-021-87607-y#Sec4
 - Damicelli et.al. (2021) Brain Connectivity meets Reservoir Computing:
www.biorxiv.org/content/10.1101/2021.01.22.427750v1.abstract
 - Fakhar et. al. (2022) Causal Influences Decouple From Their Underlying
Network Structure In Echo State Networks: arxiv.org/abs/2205.11947

Check it out and any feedback/suggestions/bug reports are more than welcome
(simply open an issue: https://github.com/fabridamicelli/echoes/issues).

All the best,
Fabrizio
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